MethylSeekR
Segmentation of Bis-seq data
Bioconductor version: 3.24 · Package version: 1.53.0
This is a package for the discovery of regulatory regions from Bis-seq data
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethylSeekR")Details
| Maintainer | Lukas Burger <Lukas.Burger@fmi.ch> |
| Author | Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler |
| License | GPL (>=2) |
| Downloads rank | 754 |
| Source branch | devel |
| biocViews | DNAMethylation, MethylSeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MethylSeekR_1.53.0.tar.gz |
| Windows binary (x86_64) | MethylSeekR_1.53.0.zip |
| macOS binary (arm64) | MethylSeekR_1.53.0.tgz |
| macOS binary (x86_64) | MethylSeekR_1.53.0.tgz |
Dependencies
Depends: rtracklayer (>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports: IRanges (>= 1.16.3), BSgenome (>= 1.26.1), GenomicRanges (>= 1.10.5), geneplotter (>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2), GenomeInfoDb
Suggests: BSgenome.Hsapiens.UCSC.hg38
Reverse dependencies
Suggests Me (2): methylPipe, RnBeads