ffpe
Quality assessment and control for FFPE microarray expression data
Bioconductor version: 3.24 · Package version: 1.57.0
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ffpe")Details
| Maintainer | Levi Waldron <lwaldron.research@gmail.com> |
| Author | Levi Waldron |
| License | GPL (>2) |
| Downloads rank | 574 |
| Source branch | devel |
| biocViews | GeneExpression, Microarray, QualityControl, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ffpe_1.57.0.tar.gz |
| Windows binary (x86_64) | ffpe_1.57.0.zip |
| macOS binary (arm64) | ffpe_1.57.0.tgz |
| macOS binary (x86_64) | ffpe_1.57.0.tgz |
Dependencies
Depends: R (>= 2.10.0), TTR, methods
Imports: Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests: genefilter, ffpeExampleData