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TxDb.Mmusculus.UCSC.mm9.knownGene

Annotation package for TxDb object(s)

Bioconductor version: 3.23 · Package version: 3.2.2

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Mmusculus.UCSC.mm9.knownGene")

Details

MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
AuthorMarc Carlson, Bioconductor Package Maintainer <maintainer@bioconductor.org> [cre]
LicenseArtistic-2.0
Downloads rank784
Source branchRELEASE_3_23
biocViewsAnnotationData, Genetics, Mus_musculus, TxDb

Download

Follow the installation instructions to use this package in your R session.

Source packageTxDb.Mmusculus.UCSC.mm9.knownGene_3.2.2.tar.gz
Dependencies

Depends: GenomicFeatures (>= 1.21.30)

Imports: AnnotationDbi

Reverse dependencies

Imports Me (6): ChIPQC, Cogito, crupR, INSPEcT, profileplyr, Rmmquant

Suggests Me (11): annotatr, BSgenome.Mmusculus.UCSC.mm9, CAGEfightR, CAGEWorkflow, chipenrich.data, chipseq, compEpiTools, EpiCompare, ggbio, GRaNIE, spatzie