seqLogo
Sequence logos for DNA sequence alignments
Bioconductor version: 3.23 · Package version: 1.78.0
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqLogo")Details
| Maintainer | Robert Ivanek <robert.ivanek@unibas.ch> |
| Author | Oliver Bembom [aut], Robert Ivanek [aut, cre] (ORCID: <https://orcid.org/0000-0002-8403-056X>) |
| License | LGPL (>= 2) |
| Bug Reports | https://github.com/ivanek/seqLogo/issues |
| Downloads rank | 4158 |
| Source branch | RELEASE_3_23 |
| biocViews | SequenceMatching, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | seqLogo_1.78.0.tar.gz |
| Windows binary (x86_64) | seqLogo_1.78.0.zip |
| macOS binary (arm64) | seqLogo_1.78.0.tgz |
| macOS binary (x86_64) | seqLogo_1.78.0.tgz |
Dependencies
Depends: R (>= 4.2), methods, grid