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DiffLogo

DiffLogo: A comparative visualisation of biooligomer motifs

Bioconductor version: 3.23 · Package version: 2.36.0

DiffLogo is an easy-to-use tool to visualize motif differences.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DiffLogo")

Details

MaintainerHendrik Treutler<hendrik.treutler@gmail.com>
Authorc( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))
LicenseGPL (>= 2)
URLhttps://github.com/mgledi/DiffLogo/
Bug Reportshttps://github.com/mgledi/DiffLogo/issues
Downloads rank438
Source branchRELEASE_3_23
biocViewsAlignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageDiffLogo_2.36.0.tar.gz
Windows binary (x86_64)DiffLogo_2.36.0.zip
macOS binary (arm64)DiffLogo_2.36.0.tgz
macOS binary (x86_64)DiffLogo_2.36.0.tgz
Dependencies

Depends: R (>= 3.4), stats, cba

Imports: grDevices, graphics, utils, tools

Suggests: knitr, testthat, seqLogo, MotifDb