sangerseqR

Tools for Sanger Sequencing Data in R

Bioconductor version: 3.23 · Package version: 1.48.0

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sangerseqR")

Details

Maintainer	Jonathon Hill <jhill@byu.edu>
Author	Jonathon T. Hill, Bradley Demarest
License	GPL-2
Downloads rank	1056
Source branch	RELEASE_3_23
biocViews	SNP, Sequencing, Software, Visualization

Documentation

Using the sangerseqR package

Download

Follow the installation instructions to use this package in your R session.

Source package	sangerseqR_1.48.0.tar.gz
Windows binary (x86_64)	sangerseqR_1.48.0.zip
macOS binary (arm64)	sangerseqR_1.48.0.tgz
macOS binary (x86_64)	sangerseqR_1.48.0.tgz

Dependencies

Depends: R (>= 3.5.0), Biostrings, pwalign, stringr

Imports: methods, shiny

Suggests: BiocStyle, knitr, RUnit, BiocGenerics

Reverse dependencies

Depends On Me (1): sangeranalyseR

Imports Me (1): scifer

Suggests Me (1): CrispRVariants