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MultiBaC

Multiomic Batch effect Correction

Bioconductor version: 3.23 · Package version: 1.22.0

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiBaC")

Details

MaintainerThe package maintainer <manuelugidos@gmail.com>
Authorperson("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")
LicenseGPL-3
Downloads rank389
Source branchRELEASE_3_23
biocViewsBatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMultiBaC_1.22.0.tar.gz
Windows binary (x86_64)MultiBaC_1.22.0.zip
macOS binary (arm64)MultiBaC_1.22.0.tgz
macOS binary (x86_64)MultiBaC_1.22.0.tgz
Dependencies

Imports: Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods

Suggests: knitr, rmarkdown, BiocStyle, devtools