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author = {Pelechano, Vicent and P{\'e}rez-Ort{\'i}n, Jos{\'e} E.},
title = {There is a steady-state transcriptome in exponentially growing yeast cells},
journal = {Yeast},
volume = {27},
number = {7},
pages = {413-422},
keywords = {transcription rate, steady state, transcriptome, Saccharomyces cerevisiae, mRNA stability},
doi = {10.1002/yea.1768},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/yea.1768},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/yea.1768},
year = {2010}
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@article{JE2,
	Annote = {doi: 10.1016/j.molcel.2004.06.004},
	Author = {Garc{\'i}a-Mart{\'i}nez, Jos{\'e} and Aranda, Agust{\'i}n and P{\'e}rez-Ort{\'i}n, Jos{\'e}E},
	Booktitle = {Molecular Cell},
	Date = {2004/07/23},
	Date-Added = {2019-01-29 12:15:03 +0000},
	Date-Modified = {2019-01-29 12:15:03 +0000},
	Doi = {10.1016/j.molcel.2004.06.004},
	Isbn = {1097-2765},
	Journal = {Molecular Cell},
	M3 = {doi: 10.1016/j.molcel.2004.06.004},
	Month = {2019/01/29},
	Number = {2},
	Pages = {303--313},
	Publisher = {Elsevier},
	Title = {Genomic Run-On Evaluates Transcription Rates for All Yeast Genes and Identifies Gene Regulatory Mechanisms},
	Ty = {JOUR},
	Url = {https://doi.org/10.1016/j.molcel.2004.06.004},
	Volume = {15},
	Year = {2004},
	Year1 = {2004},
	Bdsk-Url-1 = {https://doi.org/10.1016/j.molcel.2004.06.004},
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@article{JE3,
	An = {21103382},
	Author = {Pelechano, Vicent and Ch{\'a}vez, Sebasti{\'a}n and P{\'e}rez-Ort{\'i}n, Jos{\'e} E.},
	Date = {2010/11/16},
	Date-Added = {2019-01-29 12:15:29 +0000},
	Date-Modified = {2019-01-29 12:15:29 +0000},
	Db = {PubMed},
	Doi = {10.1371/journal.pone.0015442},
	Isbn = {1932-6203},
	J1 = {PLoS One},
	Journal = {PloS one},
	L2 = {https://www.ncbi.nlm.nih.gov/pmc/PMC2982843/},
	Month = {11},
	Number = {11},
	Pages = {e15442; e15442--e15442},
	Publisher = {Public Library of Science},
	Title = {A complete set of nascent transcription rates for yeast genes},
	Ty = {JOUR},
	U1 = {21103382{$[$}pmid{$]$}},
	U2 = {PMC2982843{$[$}pmcid{$]$}},
	Url = {https://www.ncbi.nlm.nih.gov/pubmed/21103382},
	Volume = {5},
	Year = {2010},
	Bdsk-Url-1 = {https://www.ncbi.nlm.nih.gov/pubmed/21103382},
	Bdsk-Url-2 = {http://dx.doi.org/10.1371/journal.pone.0015442}}


@article{RIBO,
	An = {25119046},
	Author = {Zid, Brian M and O'Shea, Erin K},
	Date = {2014/10/02},
	Date-Added = {2019-05-15 08:08:55 +0000},
	Date-Modified = {2019-05-15 08:08:55 +0000},
	Db = {PubMed},
	Doi = {10.1038/nature13578},
	Et = {2014/08/03},
	Isbn = {1476-4687; 0028-0836},
	J1 = {Nature},
	Journal = {Nature},
	L2 = {https://www.ncbi.nlm.nih.gov/pmc/PMC4184922/},
	La = {eng},
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	Number = {7520},
	Pages = {117--121},
	Title = {Promoter sequences direct cytoplasmic localization and translation of mRNAs during starvation in yeast},
	Ty = {JOUR},
	U1 = {25119046{$[$}pmid{$]$}},
	U2 = {PMC4184922{$[$}pmcid{$]$}},
	U4 = {nature13578{$[$}PII{$]$}},
	Url = {https://www.ncbi.nlm.nih.gov/pubmed/25119046},
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	Year = {2014},
	Bdsk-Url-1 = {https://www.ncbi.nlm.nih.gov/pubmed/25119046},
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@article{PARCLIP,
	An = {23409723},
	Author = {Freeberg, Mallory A and Han, Ting and Moresco, James J and Kong, Andy and Yang, Yu-Cheng and Lu, Zhi John and Yates, John R and Kim, John K},
	Date = {2013/02/14},
	Date-Added = {2019-01-29 12:26:46 +0000},
	Date-Modified = {2019-01-29 12:26:46 +0000},
	Db = {PubMed},
	Doi = {10.1186/gb-2013-14-2-r13},
	Isbn = {1474-760X; 1465-6906},
	J1 = {Genome Biol},
	Journal = {Genome biology},
	L2 = {https://www.ncbi.nlm.nih.gov/pmc/PMC4053964/},
	Month = {02},
	Number = {2},
	Pages = {R13--R13},
	Publisher = {BioMed Central},
	Title = {Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae},
	Ty = {JOUR},
	U1 = {23409723{$[$}pmid{$]$}},
	U2 = {PMC4053964{$[$}pmcid{$]$}},
	U4 = {gb-2013-14-2-r13{$[$}PII{$]$}},
	Url = {https://www.ncbi.nlm.nih.gov/pubmed/23409723},
	Volume = {14},
	Year = {2013},
	Bdsk-Url-1 = {https://www.ncbi.nlm.nih.gov/pubmed/23409723},
	Bdsk-Url-2 = {http://dx.doi.org/10.1186/gb-2013-14-2-r13}}

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	 @Article{ropls,
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  @Book{ggplot2,
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  title = {ggplot2: Elegant Graphics for Data Analysis},
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author = {Nueda, Maria J. and Ferrer, Alberto and Conesa, Ana},
doi = {10.1093/biostatistics/kxr042},
file = {:Users/manuelugidos/Library/Application Support/Mendeley Desktop/Downloaded/Nueda, Ferrer, Conesa - 2012 - ARSyN A method for the identification and removal of systematic noise in multifactorial time course micro.pdf:pdf},
isbn = {1465-4644},
issn = {14654644},
journal = {Biostatistics},
keywords = {Analysis of variance,Batch effect,Microarrays,Principal components analysis,Systematic noise},
number = {3},
pages = {553--566},
pmid = {22085896},
title = {{ARSyN: A method for the identification and removal of systematic noise in multifactorial time course microarray experiments}},
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