PGSEA

DOI: 10.18129/B9.bioc.PGSEA    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: 3.12

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Software
Version	1.64.0
In Bioconductor since	BioC 2.0 (R-2.5) (14 years)
License	GPL-2
Depends	R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests	GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me	GeneExpressionSignature
Imports Me
Suggests Me	gskb
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/PGSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PGSEA
Package Short Url	https://bioconductor.org/packages/PGSEA/
Package Downloads Report	Download Stats