PGSEA

DOI: 10.18129/B9.bioc.PGSEA    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: 3.10

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

 

PDF	R Script	HOWTO: PGSEA
PDF	R Script	HOWTO: PGSEA Example Workflow
PDF		Reference Manual

Details

biocViews	Microarray, Software
Version	1.60.0
In Bioconductor since	BioC 2.0 (R-2.5) (13 years)
License	GPL-2
Depends	R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests	GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me	GeneExpressionSignature
Imports Me
Suggests Me	gskb
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PGSEA_1.60.0.tar.gz
Windows Binary	PGSEA_1.60.0.zip
Mac OS X 10.11 (El Capitan)	PGSEA_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PGSEA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PGSEA
Package Short Url	https://bioconductor.org/packages/PGSEA/
Package Downloads Report	Download Stats