source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

rBiopaxParser

Parses BioPax files and represents them in R

Bioconductor version: 2.13

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

 

PDF		biopax2classgraph.pdf
PDF		biopaxsimple.pdf
PDF		mergedpw.pdf
PDF	R Script	rBiopaxParser Vignette
PDF		segclock.pdf
PDF		wntplot.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.2.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL (>= 2)
Depends
Imports	XML
Suggests	Rgraphviz, RCurl, graph, RUnit, BiocGenerics
System Requirements
URL	https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	rBiopaxParser_1.2.0.tar.gz
Windows Binary	rBiopaxParser_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	rBiopaxParser_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats