source("http://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

beadarraySNP

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: 2.13

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")

 

PDF	R Script	beadarraySNP.pdf
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version	1.28.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	GPL-2
Depends	methods, Biobase(>= 2.5.5), quantsmooth
Imports
Suggests	aCGH, affy, limma, snapCGH, beadarray, DNAcopy
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	beadarraySNP_1.28.0.tar.gz
Windows Binary	beadarraySNP_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	beadarraySNP_1.28.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats