source("http://bioconductor.org/biocLite.R")
biocLite("aCGH")

aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 2.13

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("aCGH")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")

 

PDF	R Script	aCGH Overview
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, DataImport, Genetics, Software
Version	1.40.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL-2
Depends	R (>= 2.10), cluster, survival, multtest
Imports	Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Suggests
System Requirements
URL
Depends On Me	CRImage
Imports Me	ADaCGH2, snapCGH
Suggests Me	beadarraySNP

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	aCGH_1.40.0.tar.gz
Windows Binary	aCGH_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	aCGH_1.40.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats