source("http://bioconductor.org/biocLite.R")
biocLite("MSnbase")

MSnbase

MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: 2.13

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at cam.ac.uk> with contributions from Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MSnbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSnbase")

 

PDF	R Script	Base Functions and Classes for MS-based Proteomics
PDF		itraqchem.pdf
PDF	R Script	MSnbase development
PDF	R Script	MSnbase IO capabilities
PDF		plotMzDelta-pride12011.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, QualityControl, Software
Version	1.10.4
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.7.1), Biobase(>= 2.15.2), ggplot2, mzR
Imports	plyr, IRanges, preprocessCore, vsn, grid, reshape2, stats4, affy, impute
Suggests	testthat, zoo, knitr (>= 1.1.0), rols, Rdisop, pRolocdata, msdata
System Requirements
URL
Depends On Me	msmsEDA, msmsTests, MSstats, ProCoNA, pRoloc, pRolocdata, synapter
Imports Me
Suggests Me	isobar, qcmetrics, RforProteomics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MSnbase_1.10.4.tar.gz
Windows Binary	MSnbase_1.10.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MSnbase_1.10.4.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats