piano
Platform for integrative analysis of omics data
Bioconductor version: Release (2.12)
Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.
Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>
Maintainer: Leif Varemo <piano.rpkg at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("piano")
To cite this package in a publication, start R and enter:
citation("piano")
Documentation
| R Script | Piano - Platform for Integrative Analysis of Omics data | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, DataRepresentation, DifferentialExpression, Microarray, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.0.7 |
| In Bioconductor since | BioC 2.13 (R-2.18) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.0) |
| Imports | Biobase, gplots, igraph, relations, marray |
| Suggests | yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt |
| System Requirements | |
| URL | http://www.sysbio.se/piano |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | piano_1.0.7.tar.gz |
| Windows Binary | piano_1.0.7.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | piano_1.0.7.tgz |
| Package Downloads Report | Download Stats |
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