isobar

Analysis and quantitation of isobarically tagged MSMS proteomics data

Bioconductor version: Release (2.12)

isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT.

Author: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at> and Jacques Colinge <jcolinge at cemm.oeaw.ac.at>, with contributions from Xavier Robin <xavier.robin at unige.ch> and Florent Gluck <florent.gluck at unige.ch>

Maintainer: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("isobar")

To cite this package in a publication, start R and enter:

    citation("isobar")

Documentation

PDF	R Script	isobar for developers
PDF	R Script	isobar for quantification of PTM datasets
PDF	R Script	isobar package for iTRAQ and TMT protein quantification
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Bioinformatics, MassSpectrometry, MultipleComparisons, Proteomics, QualityControl, Software
Version	1.6.6
In Bioconductor since	BioC 2.9 (R-2.14)
License	LGPL-2
Depends	R (>= 2.10.0), Biobase, stats, methods, plyr
Imports	distr
Suggests	MSnbase, OrgMassSpecR, XML, biomaRt, ggplot2, RJSONIO, Hmisc, gplots, RColorBrewer, gridExtra, limma, boot, distr
System Requirements
URL	http://bioinformatics.cemm.oeaw.ac.at
Depends On Me
Imports Me
Suggests Me	RforProteomics

Package Downloads

Package Source	isobar_1.6.6.tar.gz
Windows Binary	isobar_1.6.6.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	isobar_1.6.6.tgz
Package Downloads Report	Download Stats

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