MSnbase

MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: Release (2.12)

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at cam.ac.uk> with contributions from Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MSnbase")

To cite this package in a publication, start R and enter:

    citation("MSnbase")

PDF	R Script	Base Functions and Classes for MS-based Proteomics
PDF		itraqchem.pdf
PDF	R Script	MSnbase development
PDF	R Script	MSnbase IO capabilities
PDF		plotMzDelta-pride12011.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Version	1.8.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.3), Biobase(>= 2.15.2), ggplot2, mzR
Imports	plyr, IRanges, preprocessCore, vsn, grid, reshape2, stats4, affy, impute
Suggests	testthat, zoo, knitr, rols, Rdisop
System Requirements
URL
Depends On Me	pRoloc, pRolocdata, synapter
Imports Me
Suggests Me	isobar, RforProteomics

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