GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: 2.10

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOSemSim")

To cite this package in a publication, start R and enter:

    citation("GOSemSim")

Documentation

PDF	R Script	An introduction to GOSemSim
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Clustering, GO, Pathways, Software
Depends	R (>= 2.10)
Imports	methods, AnnotationDbi, GO.db, org.Hs.eg.db
Suggests	DOSE, clusterProfiler
System Requirements
License	GPL-2
URL	http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE, ReactomePA
Version	1.14.0
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	GOSemSim_1.14.0.tar.gz
Windows Binary	GOSemSim_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOSemSim_1.14.0.tgz
Package Downloads Report	Download Stats

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