GOSemSim-package | Gene Ontology-based Sematic Similarity Measures |
clusterSim | Semantic Similarity Between Two Gene Clusters |
computeIC | Class "Params" |
computeIC-method | Class "Params" |
GeneClusterSet-class | Class "GeneClusterSet" |
GeneSet-class | Class "GeneSet" |
geneSim | Semantic Similarity Between two Genes |
GOSemSim | Gene Ontology-based Sematic Similarity Measures |
GOSet | Methods for GOSet class |
GOSet-class | Class "GOSet" |
GOSet-methods | Methods for GOSet class |
goSim | Semantic Similarity Between Two GO Terms |
IC | Information content of GO terms |
Info_Contents_anopheles_BP | Information content of GO terms |
Info_Contents_anopheles_CC | Information content of GO terms |
Info_Contents_anopheles_MF | Information content of GO terms |
Info_Contents_arabidopsis_BP | Information content of GO terms |
Info_Contents_arabidopsis_CC | Information content of GO terms |
Info_Contents_arabidopsis_MF | Information content of GO terms |
Info_Contents_bovine_BP | Information content of GO terms |
Info_Contents_bovine_CC | Information content of GO terms |
Info_Contents_bovine_MF | Information content of GO terms |
Info_Contents_canine_BP | Information content of GO terms |
Info_Contents_canine_CC | Information content of GO terms |
Info_Contents_canine_MF | Information content of GO terms |
Info_Contents_chicken_BP | Information content of GO terms |
Info_Contents_chicken_CC | Information content of GO terms |
Info_Contents_chicken_MF | Information content of GO terms |
Info_Contents_chimp_BP | Information content of GO terms |
Info_Contents_chimp_CC | Information content of GO terms |
Info_Contents_chimp_MF | Information content of GO terms |
Info_Contents_coelicolor_BP | Information content of GO terms |
Info_Contents_coelicolor_CC | Information content of GO terms |
Info_Contents_coelicolor_MF | Information content of GO terms |
Info_Contents_ecolik12_BP | Information content of GO terms |
Info_Contents_ecolik12_CC | Information content of GO terms |
Info_Contents_ecolik12_MF | Information content of GO terms |
Info_Contents_ecsakai_BP | Information content of GO terms |
Info_Contents_ecsakai_CC | Information content of GO terms |
Info_Contents_ecsakai_MF | Information content of GO terms |
Info_Contents_fly_BP | Information content of GO terms |
Info_Contents_fly_CC | Information content of GO terms |
Info_Contents_fly_MF | Information content of GO terms |
Info_Contents_human_BP | Information content of GO terms |
Info_Contents_human_CC | Information content of GO terms |
Info_Contents_human_MF | Information content of GO terms |
Info_Contents_malaria_BP | Information content of GO terms |
Info_Contents_malaria_CC | Information content of GO terms |
Info_Contents_malaria_MF | Information content of GO terms |
Info_Contents_mouse_BP | Information content of GO terms |
Info_Contents_mouse_CC | Information content of GO terms |
Info_Contents_mouse_MF | Information content of GO terms |
Info_Contents_pig_BP | Information content of GO terms |
Info_Contents_pig_CC | Information content of GO terms |
Info_Contents_pig_MF | Information content of GO terms |
Info_Contents_rat_BP | Information content of GO terms |
Info_Contents_rat_CC | Information content of GO terms |
Info_Contents_rat_MF | Information content of GO terms |
Info_Contents_rhesus_BP | Information content of GO terms |
Info_Contents_rhesus_CC | Information content of GO terms |
Info_Contents_rhesus_MF | Information content of GO terms |
Info_Contents_worm_BP | Information content of GO terms |
Info_Contents_worm_CC | Information content of GO terms |
Info_Contents_worm_MF | Information content of GO terms |
Info_Contents_xenopus_BP | Information content of GO terms |
Info_Contents_xenopus_CC | Information content of GO terms |
Info_Contents_xenopus_MF | Information content of GO terms |
Info_Contents_yeast_BP | Information content of GO terms |
Info_Contents_yeast_CC | Information content of GO terms |
Info_Contents_yeast_MF | Information content of GO terms |
Info_Contents_zebrafish_BP | Information content of GO terms |
Info_Contents_zebrafish_CC | Information content of GO terms |
Info_Contents_zebrafish_MF | Information content of GO terms |
loadAnnoPkg | Class "Params" |
loadAnnoPkg-method | Class "Params" |
loadGOMap | Class "Params" |
loadGOMap-method | Class "Params" |
mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters |
mgeneSim | Pairwise Semantic Similarity for a List of Genes |
mgoSim | Semantic Similarity Between two GO terms lists |
Params | Methods for Params class |
Params-class | Class "Params" |
Params-methods | Methods for Params class |
setCombineMethod<- | Class "Params" |
setCombineMethod<--method | Class "Params" |
setMethod<- | Class "Params" |
setMethod<--method | Class "Params" |
setOntology<- | Class "Params" |
setOntology<--method | Class "Params" |
setOrganism<- | Class "Params" |
setOrganism<--method | Class "Params" |
sim | Methods for calculating semantic similarity |
sim-method | Methods for calculating semantic similarity |
sim-methods | Methods for calculating semantic similarity |
[-method | Class "Params" |