tximportData
tximportData
Bioconductor version: 3.23 · Package version: 1.40.0
This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tximportData") Details
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| Author | Michael Love |
| License | GPL (>= 2) |
| Downloads rank | 1263 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, RNASeqData, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | tximportData_1.40.0.tar.gz |
Reverse dependencies
Imports Me (1): TDbasedUFE
Suggests Me (6): DESeq2, eds, fishpond, tximeta, tximport, variancePartition