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tissueTreg

TWGBS and RNA-seq data from tissue T regulatory cells from mice

Bioconductor version: 3.23 · Package version: 1.32.0

The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tissueTreg")

Details

MaintainerCharles Imbusch <c.imbusch@dkfz.de>
AuthorCharles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]
LicenseGPL (>= 2)
URLhttps://github.com/cimbusch/tissueTreg
Downloads rank217
Source branchRELEASE_3_23
biocViewsExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue

Download

Follow the installation instructions to use this package in your R session.

Source packagetissueTreg_1.32.0.tar.gz
Dependencies

Depends: R (>= 3.5)

Suggests: BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2

Reverse dependencies

Suggests Me (1): DMRcate