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timecoursedata

A data package for timecourse RNA-seq and microarray gene expression data sets

Bioconductor version: 3.23 · Package version: 1.22.0

This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("timecoursedata")

Details

MaintainerNelle Varoquaux <nelle.varoquaux@gmail.com>
AuthorElizabeth Purdom [aut] (ORCID: <https://orcid.org/0000-0001-9455-7990>), Nelle Varoquaux [aut, cre] (ORCID: <https://orcid.org/0000-0002-8748-6546>)
LicenseBSD 3-clause License + file LICENSE
Downloads rank142
Source branchRELEASE_3_23
biocViewsExperimentData, ExpressionData, MicroarrayData, RNASeqData

Download

Follow the installation instructions to use this package in your R session.

Source packagetimecoursedata_1.22.0.tar.gz
Dependencies

Depends: R (>= 4.0), SummarizedExperiment

Suggests: testthat (>= 1.0.0), knitr, rmarkdown, markdown, covr, BiocStyle