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rcellminerData

rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Bioconductor version: 3.23 · Package version: 2.34.0

The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rcellminerData")

Details

MaintainerAugustin Luna <lunaa@cbio.mskcc.org>, Vinodh Rajapakse <vinodh.rajapakse@nih.gov>, Fathi Elloumi <fathi.elloumi@nih.gov>
AuthorAugustin Luna, Vinodh Rajapakse, Fabricio Sousa
LicenseLGPL-3 + file LICENSE
Downloads rank244
Source branchRELEASE_3_23
biocViewsCancerData, CopyNumberVariationData, ExperimentData, ExpressionData, MicroarrayData, NCI, SNPData, miRNAData

Download

Follow the installation instructions to use this package in your R session.

Source packagercellminerData_2.34.0.tar.gz
Dependencies

Depends: R (>= 3.5.0), Biobase

Suggests: knitr, testthat, BiocStyle, rcellminer, rmarkdown

Reverse dependencies

Depends On Me (1): rcellminer