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nanotubes

Mouse nanotube CAGE data

Bioconductor version: 3.23 · Package version: 1.28.0

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nanotubes")

Details

MaintainerMalte Thodberg <maltethodberg@gmail.com>
AuthorMalte Thodberg
LicenseGPL-3
URLhttps://github.com/MalteThodberg/nanotubes
Bug Reportshttps://github.com/MalteThodberg/nanotubes/issues
Downloads rank150
Source branchRELEASE_3_23
biocViewsExperimentData, ExpressionData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagenanotubes_1.28.0.tar.gz
Dependencies

Depends: R (>= 3.6)

Suggests: knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR

Reverse dependencies

Depends On Me (1): CAGEWorkflow