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muleaData

Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package

Bioconductor version: 3.23 · Package version: 1.8.0

ExperimentHubData package for the 'mulea' comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("muleaData")

Details

MaintainerEszter Ari <arieszter@gmail.com>
AuthorEszter Ari [aut, cre] (ORCID: <https://orcid.org/0000-0001-7774-1067>), Márton Ölbei [aut] (ORCID: <https://orcid.org/0000-0002-4903-6237>), Lejla Gul [aut], Balázs Bohár [aut] (ORCID: <https://orcid.org/0000-0002-3033-5448>), Tamás Stirling [aut] (ORCID: <https://orcid.org/0000-0002-8964-6443>)
LicenseMIT + file LICENSE
URLhttps://github.com/ELTEbioinformatics/muleaData
Bug Reportshttps://support.bioconductor.org/tag/muleaData/issues
Downloads rank104
Source branchRELEASE_3_23
biocViewsArabidopsis_thaliana_Data, Bacillus_subtilis_Data, Caenorhabditis_elegans_Data, ChIPSeqData, DNASeqData, Danio_rerio_Data, Drosophila_melanogaster_Data, Escherichia_coli_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Pan_troglodytes_Data, Pseudomonas_aeruginosa_Data, Rattus_norvegicus_Data, Saccharomyces_cerevisiae_Data, Staphylococcus_aureus_Data, miRNAData

Download

Follow the installation instructions to use this package in your R session.

Source packagemuleaData_1.8.0.tar.gz
Dependencies

Suggests: knitr, rmarkdown, ExperimentHub, dplyr