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microbiomeDataSets

Experiment Hub based microbiome datasets

Bioconductor version: 3.23 · Package version: 1.20.0

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microbiomeDataSets")

Details

MaintainerLeo Lahti <leo.lahti@iki.fi>
AuthorLeo Lahti [cre, aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>), Felix G.M. Ernst [aut] (ORCID: <https://orcid.org/0000-0001-5064-0928>), Sudarshan Shetty [aut] (ORCID: <https://orcid.org/0000-0001-7280-9915>), Chouaib Benchraka [ctb] (ORCID: <https://orcid.org/0000-0002-1167-7848>), Yagmur Simsek [ctb]
LicenseCC0
Downloads rank321
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, MicrobiomeData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagemicrobiomeDataSets_1.20.0.tar.gz
Dependencies

Depends: R (>= 4.1), SummarizedExperiment, TreeSummarizedExperiment, MultiAssayExperiment

Imports: methods, utils, BiocGenerics, ExperimentHub, Biostrings, ape

Suggests: knitr, rmarkdown, BiocStyle, SingleCellExperiment, testthat

Reverse dependencies

Suggests Me (1): mia