curatedAdipoChIP
A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Bioconductor version: 3.23 · Package version: 1.28.0
A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("curatedAdipoChIP") Details
| Maintainer | Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg> |
| Author | Mahmoud Ahmed [aut, cre] (ORCID: <https://orcid.org/0000-0002-4377-6541>) |
| License | GPL-3 |
| URL | https://github.com/MahShaaban/curatedAdipoChIP |
| Bug Reports | https://github.com/MahShaaban/curatedAdipoChIP/issues |
| Downloads rank | 146 |
| Source branch | RELEASE_3_23 |
| biocViews | ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | curatedAdipoChIP_1.28.0.tar.gz |
Dependencies
Depends: R (>= 3.6), SummarizedExperiment, ExperimentHub
Suggests: knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2