RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Bioconductor version: 3.23 · Package version: 0.50.0
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAseqData.HNRNPC.bam.chr14") Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès |
| License | LGPL |
| URL | http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/ |
| Downloads rank | 1071 |
| Source branch | RELEASE_3_23 |
| biocViews | ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RNAseqData.HNRNPC.bam.chr14_0.50.0.tar.gz |
Dependencies
Suggests: GenomicAlignments, BiocManager
Reverse dependencies
Depends On Me (1): sequencing
Suggests Me (8): BiocParallel, cigarillo, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs