Bioc2026 Registration Open!

RNAseqData.HNRNPC.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: 3.23 · Package version: 0.50.0

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAseqData.HNRNPC.bam.chr14")

Details

MaintainerHervé Pagès <hpages.on.github@gmail.com>
AuthorHervé Pagès
LicenseLGPL
URLhttp://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Downloads rank1071
Source branchRELEASE_3_23
biocViewsArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packageRNAseqData.HNRNPC.bam.chr14_0.50.0.tar.gz
Dependencies

Suggests: GenomicAlignments, BiocManager

Reverse dependencies

Depends On Me (1): sequencing

Suggests Me (8): BiocParallel, cigarillo, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs