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PCHiCdata

Promoter Capture Hi-C data

Bioconductor version: 3.23 · Package version: 1.40.0

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCHiCdata")

Details

MaintainerMikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk>
AuthorPaula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov
LicenseArtistic-2.0
Downloads rank161
Source branchRELEASE_3_23
biocViewsExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell

Download

Follow the installation instructions to use this package in your R session.

Source packagePCHiCdata_1.40.0.tar.gz
Dependencies

Depends: R (>= 3.2), Chicago

Suggests: testthat, BiocStyle, knitr

Reverse dependencies

Suggests Me (1): Chicago