NestLink
NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles
Bioconductor version: 3.23 · Package version: 1.28.0
Provides next-generation sequencing (NGS) and mass spectrometry (MS) sample data, code snippets and replication material used for developing NestLink. The NestLink approach is a protein binder selection and identification technology able to biophysically characterize thousands of library members at once without handling individual clones at any stage of the process. Data were acquired on NGS and MS platforms at the Functional Genomics Center Zurich.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NestLink") Details
| Maintainer | Lennart Opitz <lopitz@fgcz.ethz.ch> |
| Author | Pascal Egloff [aut] (ORCID: <https://orcid.org/0000-0001-8948-3704>), Iwan Zimmermann [ctb] (ORCID: <https://orcid.org/0000-0003-3476-4749>), Fabian M. Arnold [ctb], Cedric A.J. Hutter [ctb] (ORCID: <https://orcid.org/0000-0002-8920-3343>), Lennart Opitz [aut, cre] (ORCID: <https://orcid.org/0000-0001-7945-6737>), Lucy Poveda [ctb] (ORCID: <https://orcid.org/0000-0002-5291-5582>), Hans-Anton Keserue [ctb], Christian Panse [aut, ctb] (ORCID: <https://orcid.org/0000-0003-1975-3064>), Bernd Roschitzki [aut] (ORCID: <https://orcid.org/0000-0001-5756-9773>), Markus Seeger [aut] (ORCID: <https://orcid.org/0000-0003-1761-8571>) |
| License | GPL |
| Downloads rank | 189 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, MassSpectrometryData, ReproducibleResearch, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | NestLink_1.28.0.tar.gz |
Dependencies
Depends: R (>= 3.6), AnnotationHub (>= 2.15), ExperimentHub (>= 1.0), Biostrings (>= 2.51), gplots (>= 3.0), protViz (>= 0.4), ShortRead (>= 1.41)
Imports: grDevices, graphics, stats, utils
Suggests: BiocStyle (>= 2.2), DT, ggplot2, knitr, rmarkdown, testthat, specL, lattice, scales