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MetaGxPancreas

Transcriptomic Pancreatic Cancer Datasets

Bioconductor version: 3.23 · Package version: 1.32.0

A collection of pancreatic Cancer transcriptomic datasets that are part of the MetaGxData package compendium. This package contains multiple pancreas cancer datasets that have been downloaded from various resources and turned into SummarizedExperiment objects. The details of how the authors normalized the data can be found in the experiment data section of the objects. Additionally, the location the data was obtained from can be found in the url variables of the experiment data portion of each SE.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaGxPancreas")

Details

MaintainerBenjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
AuthorMichael Zon [aut], Vandana Sandhu [aut], Christopher Eeles [ctb], Michael Tran Cao-Anh [ctb], Benjamin Haibe-Kains [aut, cre]
LicenseArtistic-2.0
Downloads rank166
Source branchRELEASE_3_23
biocViewsArrayExpress, CancerData, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, NCI, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packageMetaGxPancreas_1.32.0.tar.gz
Dependencies

Depends: SummarizedExperiment, ExperimentHub, R (>= 3.6.0)

Imports: stats, impute, S4Vectors, AnnotationHub

Suggests: testthat, knitr, BiocStyle, rmarkdown, markdown