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HMP16SData

16S rRNA Sequencing Data from the Human Microbiome Project

Bioconductor version: 3.23 · Package version: 1.32.0

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HMP16SData")

Details

MaintainerLucas schiffer <schiffer.lucas@gmail.com>
AuthorLucas schiffer [aut, cre] (ORCID: <https://orcid.org/0000-0003-3628-0326>), Rimsha Azhar [aut], Marcel Ramos [ctb], Ludwig Geistlinger [ctb], Levi Waldron [aut]
LicenseArtistic-2.0
URLhttps://github.com/waldronlab/HMP16SData
Bug Reportshttps://github.com/waldronlab/HMP16SData/issues
Downloads rank228
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packageHMP16SData_1.32.0.tar.gz
Dependencies

Depends: R (>= 4.1.0), SummarizedExperiment

Imports: AnnotationHub, ExperimentHub, S4Vectors, assertthat, dplyr, kableExtra, knitr, magrittr, methods, readr, stringr, tibble, utils

Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, circlize, cowplot, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr