DeSousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: 3.23 · Package version: 1.48.0

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeSousa2013")

Maintainer	Xin Wang <Xin.Wang@cruk.cam.ac.uk>
Author	Xin Wang <Xin.Wang@cruk.cam.ac.uk>
License	Artistic-2.0
Downloads rank	196
Source branch	RELEASE_3_23
biocViews	CancerData, ColonCancerData, ExperimentData, MicroarrayData

Follow the installation instructions to use this package in your R session.

Source package

Dependencies

Depends: R (>= 2.15)

Imports: affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase