BloodCancerMultiOmics2017
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis
Bioconductor version: 3.23 · Package version: 1.32.0
The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BloodCancerMultiOmics2017")Details
| Maintainer | Małgorzata Oleś <dr.malgorzata.oles@gmail.com> |
| Author | Małgorzata Oleś, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber |
| License | LGPL (>= 3) |
| Downloads rank | 175 |
| Source branch | RELEASE_3_23 |
| biocViews | CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BloodCancerMultiOmics2017_1.32.0.tar.gz |
Dependencies
Depends: R (>= 3.5.0)
Imports: beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
Suggests: BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable