TxDb.Hsapiens.UCSC.hg19.knownGene
Annotation package for TxDb object(s)
Bioconductor version: 3.23 · Package version: 3.22.1
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Bioconductor Core Team, Bioconductor Package Maintainer <maintainer@bioconductor.org> [cre] |
| License | Artistic-2.0 |
| Downloads rank | 5834 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, TxDb |
Download
Follow the installation instructions to use this package in your R session.
| Source package | TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1.tar.gz |
Reverse dependencies
Depends On Me (5): annotation, FDb.InfiniumMethylation.hg19, Homo.sapiens, variants, vulcan
Imports Me (17): appreci8R, ChIPQC, ChIPseeker, crupR, decompTumor2Sig, epimutacions, fourSynergy, HiLDA, musicatk, OutSplice, profileplyr, RareVariantVis, rCGH, RgnTX, rGREAT, signifinder, uncoverappLib
Suggests Me (83): AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, Bioc.gff, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, chipenrich.data, ChIPpeakAnno, chromPlot, cinaR, CNVRanger, cpvSNP, CRISPRseek, derfinder, derfinderPlot, dmrseq, driveR, EpiCompare, EpiMix, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenVisR, geomeTriD, ggbio, gmapR, GOaGO, GRaNIE, groHMM, GUIDEseq, gwascat, HelloRanges, InPAS, karyoploteR, linkSet, MAST, MesKit, methylumi, MutationalPatterns, NanoMethViz, NoRCE, oncoPredict, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionalpcs, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SNPassoc, SOMNiBUS, spatzie, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, UMI4Cats, VariantAnnotation, VariantFiltering, VariantTools