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BioMartGOGeneSets

Gene Ontology Gene Sets from BioMart

Bioconductor version: 3.23 · Package version: 0.99.12

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioMartGOGeneSets")

Details

MaintainerZuguang Gu <guzuguang@suat-sz.edu.cn>
AuthorZuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
LicenseMIT + file LICENSE
URLhttps://github.com/jokergoo/BioMartGOGeneSets
Downloads rank112
Source branchRELEASE_3_23
biocViewsAnnotationData, Organism

Download

Follow the installation instructions to use this package in your R session.

Source packageBioMartGOGeneSets_0.99.12.tar.gz
Dependencies

Depends: R (>= 4.0.0)

Imports: utils, S4Vectors, GenomicRanges

Suggests: biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT