tRNA

Analyzing tRNA sequences and structures

Bioconductor version: 3.23 · Package version: 1.30.0

The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tRNA")

Details

Maintainer	Felix GM Ernst <felix.gm.ernst@outlook.com>
Author	Felix GM Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>)
License	GPL-3 + file LICENSE
Bug Reports	https://github.com/FelixErnst/tRNA/issues
Downloads rank	571
Source branch	RELEASE_3_23
biocViews	Software, Visualization

Documentation

Analyzing tRNA sequences and structures

Download

Follow the installation instructions to use this package in your R session.

Source package	tRNA_1.30.0.tar.gz
Windows binary (x86_64)	tRNA_1.30.0.zip
macOS binary (arm64)	tRNA_1.30.0.tgz
macOS binary (x86_64)	tRNA_1.30.0.tgz

Dependencies

Depends: R (>= 3.5), GenomicRanges, Structstrings

Imports: stringr, S4Vectors, methods, BiocGenerics, IRanges, XVector, Biostrings, Modstrings, ggplot2, scales

Suggests: knitr, rmarkdown, testthat, BiocStyle, tRNAscanImport

Reverse dependencies

Depends On Me (2): tRNAdbImport, tRNAscanImport