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similaRpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Bioconductor version: 3.23 · Package version: 1.44.0

This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("similaRpeak")

Details

MaintainerAstrid DeschĂȘnes <adeschen@hotmail.com>
AuthorAstrid DeschĂȘnes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
LicenseArtistic-2.0
URLhttps://github.com/adeschen/similaRpeak
Bug Reportshttps://github.com/adeschen/similaRpeak/issues
Downloads rank538
Source branchRELEASE_3_23
biocViewsBiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagesimilaRpeak_1.44.0.tar.gz
Windows binary (x86_64)similaRpeak_1.44.0.zip
macOS binary (arm64)similaRpeak_1.44.0.tgz
macOS binary (x86_64)similaRpeak_1.44.0.tgz
Dependencies

Depends: R6 (>= 2.0)

Imports: stats

Suggests: RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle