rBLAST

R Interface for the Basic Local Alignment Search Tool

Bioconductor version: 3.23 · Package version: 1.8.0

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) running locally to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rBLAST")

Details

Maintainer	Michael Hahsler <mhahsler@lyle.smu.edu>
Author	Michael Hahsler [aut, cre] (ORCID: <https://orcid.org/0000-0003-2716-1405>), Nagar Anurag [aut]
License	GPL-3
URL	https://github.com/mhahsler/rBLAST
Bug Reports	https://github.com/mhahsler/rBLAST/issues
System Requirements	ncbi-blast+
Downloads rank	388
Source branch	RELEASE_3_23
biocViews	Alignment, DataImport, Genetics, SequenceMatching, Sequencing, Software

Documentation

rBLAST: R Interface for the Basic Local Alignment Search Tool

Download

Follow the installation instructions to use this package in your R session.

Source package	rBLAST_1.8.0.tar.gz
Windows binary (x86_64)	rBLAST_1.8.0.zip
macOS binary (arm64)	rBLAST_1.8.0.tgz
macOS binary (x86_64)	rBLAST_1.8.0.tgz

Dependencies

Depends: Biostrings (>= 2.26.2)

Imports: methods, utils, BiocFileCache

Suggests: knitr, rmarkdown, testthat

Reverse dependencies

Imports Me (1): ClustIRR