postNet
Post-transcriptional network modeling
Bioconductor version: 3.23 · Package version: 1.0.0
A tool that enables in silico identification, integration, and modeling of mRNA features that influence post-transcriptional regulation of gene expression at a transcriptome-wide scale.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("postNet")Details
| Maintainer | Krzysztof Szkop <krzysztof.szkop@gmail.com> |
| Author | Krzysztof Szkop [aut, cre], Kathleen Watt [aut], Ola Larsson [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/kszkop/postNet |
| Bug Reports | https://github.com/kszkop/postNet/issues |
| Downloads rank | 271 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, FeatureExtraction, GeneExpression, GeneRegulation, Network, RNASeq, RiboSeq, Sequencing, Software, Transcriptomics |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | postNet_1.0.0.tar.gz |
| Windows binary (x86_64) | postNet_1.0.0.zip |
| macOS binary (arm64) | postNet_1.0.0.tgz |
| macOS binary (x86_64) | postNet_1.0.0.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: dplyr, plyr, Biostrings, data.table, gridExtra, seqinr, R.utils, reshape2, vioplot, stringr, plotrix, gplots, ggplot2, ggrepel, anota2seq, memes, GenomicRanges, IRanges, WriteXLS, randomForest, igraph, Boruta, ROCR, caret, msigdb, ExperimentHub, AnnotationHub, GSEABase, fgsea, org.Hs.eg.db, org.Mm.eg.db, RColorBrewer, httr2, rvest, umap, clusterProfiler (>= 4.18.4), gage, withr, grDevices, graphics, methods, stats, utils, tools, BiocFileCache, curl
Suggests: knitr, rmarkdown, BiocStyle, pdftools, magick, testthat (>= 3.0.0)