plaid

PLAID ultrafast gene set enrichment scoring

Bioconductor version: 3.23 · Package version: 1.0.1

PLAID (Pathway Level Average Intensity Detection) is an ultra-fast method to compute single-sample enrichment scores for gene expression or proteomics data. For each sample, plaid computes the gene set score as the average intensity of the genes/proteins in the gene set. The output is a gene set score matrix suitable for further analyses.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plaid")