iCOBRA
Comparison and Visualization of Ranking and Assignment Methods
Bioconductor version: 3.23 · Package version: 1.40.0
This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iCOBRA")Details
| Maintainer | Charlotte Soneson <charlottesoneson@gmail.com> |
| Author | Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>) |
| License | GPL (>=2) |
| URL | https://csoneson.github.io/iCOBRA/ |
| Bug Reports | https://github.com/csoneson/iCOBRA/issues |
| Downloads rank | 852 |
| Source branch | RELEASE_3_23 |
| biocViews | Classification, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | iCOBRA_1.40.0.tar.gz |
| Windows binary (x86_64) | iCOBRA_1.40.0.zip |
| macOS binary (arm64) | iCOBRA_1.40.0.tgz |
| macOS binary (x86_64) | iCOBRA_1.40.0.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: shiny (>= 0.9.1.9008), shinydashboard, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, utils, rlang, prompter
Reverse dependencies
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