gDRcore
Processing functions and interface to process and analyze drug dose-response data
Bioconductor version: 3.23 · Package version: 1.10.0
This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRcore")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Bartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>), Arkadiusz Gladki [cre, aut] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Marc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>), Pawel Piatkowski [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Marcin Kamianowski [aut], Allison Vuong [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/gdrplatform/gDRcore, https://gdrplatform.github.io/gDRcore/ |
| Bug Reports | https://github.com/gdrplatform/gDRcore/issues |
| Downloads rank | 337 |
| Source branch | RELEASE_3_23 |
| biocViews | ShinyApps, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | gDRcore_1.10.0.tar.gz |
| Windows binary (x86_64) | gDRcore_1.10.0.zip |
| macOS binary (arm64) | gDRcore_1.10.0.tgz |
| macOS binary (x86_64) | gDRcore_1.10.0.tgz |
Dependencies
Depends: R (>= 4.2)
Imports: BumpyMatrix, BiocParallel, checkmate, futile.logger, gDRutils (>= 1.7.1), MultiAssayExperiment, purrr, stringr, S4Vectors, SummarizedExperiment, data.table
Suggests: BiocStyle, gDRstyle (>= 1.7.1), gDRimport (>= 1.7.1), gDRtestData (>= 1.7.1), IRanges, knitr, pkgbuild, qs2, testthat, yaml
Reverse dependencies
Depends On Me (1): gDR