Wrench
Wrench normalization for sparse count data
Bioconductor version: 3.23 · Package version: 1.30.0
Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Wrench")Details
| Maintainer | Hector Corrada Bravo <hcorrada@gmail.com> |
| Author | Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre] |
| License | Artistic-2.0 |
| URL | https://github.com/HCBravoLab/Wrench |
| Bug Reports | https://github.com/HCBravoLab/Wrench/issues |
| Downloads rank | 2326 |
| Source branch | RELEASE_3_23 |
| biocViews | Normalization, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Wrench_1.30.0.tar.gz |
| Windows binary (x86_64) | Wrench_1.30.0.zip |
| macOS binary (arm64) | Wrench_1.30.0.tgz |
| macOS binary (x86_64) | Wrench_1.30.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: limma, matrixStats, locfit, stats, graphics
Suggests: knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
Reverse dependencies
Imports Me (1): metagenomeSeq