TileDBArray

Using TileDB as a DelayedArray Backend

Bioconductor version: 3.23 · Package version: 1.22.0

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TileDBArray")

Details

Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Author	Aaron Lun [aut, cre], Genentech, Inc. [cph]
License	MIT + file LICENSE
URL	https://github.com/LTLA/TileDBArray
Bug Reports	https://github.com/LTLA/TileDBArray
Downloads rank	415
Source branch	RELEASE_3_23
biocViews	DataRepresentation, Infrastructure, Software

Documentation

A DelayedArray backend for TileDB

Download

Follow the installation instructions to use this package in your R session.

Source package	TileDBArray_1.22.0.tar.gz
Windows binary (x86_64)	TileDBArray_1.22.0.zip
macOS binary (arm64)	TileDBArray_1.22.0.tgz
macOS binary (x86_64)	TileDBArray_1.22.0.tgz

Dependencies

Depends: SparseArray (>= 1.5.20), DelayedArray (>= 0.31.7)

Imports: methods, tiledb, S4Vectors

Suggests: knitr, Matrix, rmarkdown, BiocStyle, BiocParallel, testthat

Reverse dependencies

Imports Me (1): beachmat.tiledb