SIMAT
GC-SIM-MS data processing and alaysis tool
Bioconductor version: 3.23 · Package version: 1.44.0
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SIMAT") Details
| Maintainer | M. R. Nezami Ranjbar <nranjbar@vt.edu> |
| Author | M. R. Nezami Ranjbar <nranjbar@vt.edu> |
| License | GPL-2 |
| URL | http://omics.georgetown.edu/SIMAT.html |
| Downloads rank | 470 |
| Source branch | RELEASE_3_23 |
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SIMAT_1.44.0.tar.gz |
| Windows binary (x86_64) | SIMAT_1.44.0.zip |
| macOS binary (arm64) | SIMAT_1.44.0.tgz |
| macOS binary (x86_64) | SIMAT_1.44.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Rcpp (>= 0.11.3)
Imports: mzR, ggplot2, grid, reshape2, grDevices, stats, utils
Suggests: RUnit, BiocGenerics