Rfastp
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).
Bioconductor version: 3.23 · Package version: 1.22.0
Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rfastp")Details
| Maintainer | Wei Wang <periwinkle.david@gmail.com> |
| Author | Wei Wang [cre, aut] (ORCID: <https://orcid.org/0000-0002-3216-7118>), Ji-Dung Luo [ctb] (ORCID: <https://orcid.org/0000-0003-0150-1440>), Thomas Carroll [aut] (ORCID: <https://orcid.org/0000-0002-0073-1714>) |
| License | GPL-3 + file LICENSE |
| System Requirements | GNU make |
| Downloads rank | 478 |
| Source branch | RELEASE_3_23 |
| biocViews | Preprocessing, QualityControl, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rfastp_1.22.0.tar.gz |
| Windows binary (x86_64) | Rfastp_1.22.0.zip |
| macOS binary (arm64) | Rfastp_1.22.0.tgz |
| macOS binary (x86_64) | Rfastp_1.22.0.tgz |