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MsBackendMgf

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: 3.23 · Package version: 1.20.1

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMgf")

Details

MaintainerRforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>
AuthorRforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>), Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Adriano Rutz [ctb] (ORCID: <https://orcid.org/0000-0003-0443-9902>), Corey Broeckling [ctb] (ORCID: <https://orcid.org/0000-0002-6158-827X>)
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MsBackendMgf
Bug Reportshttps://github.com/RforMassSpectrometry/MsBackendMgf/issues
Downloads rank1076
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMsBackendMgf_1.20.1.tar.gz
Windows binary (x86_64)MsBackendMgf_1.20.1.zip
macOS binary (arm64)MsBackendMgf_1.20.1.tgz
macOS binary (x86_64)MsBackendMgf_1.20.1.tgz
Dependencies

Depends: R (>= 4.0), Spectra (>= 1.5.14)

Imports: ProtGenerics (>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats, data.table

Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown

Reverse dependencies

Suggests Me (4): CompoundDb, MsBackendRawFileReader, SpectriPy, xcms