GenomicCoordinates
Enhanced string parsing for genomic coordinates
Bioconductor version: 3.23 · Package version: 1.0.0
Extends string parsing capabilities for genomic coordinates, supporting various formats including comma-separated numbers, space-delimited coordinates, and automatic detection of GRanges, GPos, and GInteractions objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicCoordinates")Details
| Maintainer | Jacques Serizay <jacquesserizay@gmail.com> |
| Author | Jacques Serizay [aut, cre] (ORCID: <https://orcid.org/0000-0002-4295-0624>) |
| License | Artistic-2.0 |
| URL | https://github.com/js2264/GenomicCoordinates |
| Bug Reports | https://github.com/js2264/GenomicCoordinates/issues |
| Downloads rank | 164 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, GenomeAnnotation, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicCoordinates_1.0.0.tar.gz |
| Windows binary (x86_64) | GenomicCoordinates_1.0.0.zip |
| macOS binary (arm64) | GenomicCoordinates_1.0.0.tgz |
| macOS binary (x86_64) | GenomicCoordinates_1.0.0.tgz |
Dependencies
Depends: R (>= 4.5), GenomicRanges, IRanges
Imports: S4Vectors, Seqinfo, InteractionSet, methods, plyranges, plyinteractions
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle