GeneStructureTools
Tools for spliced gene structure manipulation and analysis
Bioconductor version: 3.23 · Package version: 1.32.0
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneStructureTools")Details
| Maintainer | Beth Signal <b.signal@garvan.org.au> |
| Author | Beth Signal |
| License | BSD_3_clause + file LICENSE |
| Downloads rank | 515 |
| Source branch | RELEASE_3_23 |
| biocViews | AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneStructureTools_1.32.0.tar.gz |
| Windows binary (x86_64) | GeneStructureTools_1.32.0.zip |
| macOS binary (arm64) | GeneStructureTools_1.32.0.tgz |
| macOS binary (x86_64) | GeneStructureTools_1.32.0.tgz |
Dependencies
Imports: Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods